++pandoc. I write all my books in Latex (despite the looks of horror from everyone I mention it to). I compile to PDF for printing and use pandoc to build every other format. It just works. I spent less than 3 or 4 hours, total, integrating it into my "book build".
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Ever used Pandoc? http://johnmacfarlane.net/pandoc/
You can embed LaTeX into your Markdown, and still have it render to many targets (HTML, PDF, etc.) with full linking and fidelity.
++pandoc. I write all my books in Latex (despite the looks of horror from everyone I mention it to). I compile to PDF for printing and use pandoc to build every other format. It just works. I spent less than 3 or 4 hours, total, integrating it into my "book build".