If you look at a figure in an article, for example https://www.authorea.com/483, you'll notice that the figure reference has been pulled out of the latex source. We did that so that in the online version of an article we can make figures cooler, like attaching data to them. Figures exist in their own folders, and we have big plans for those folders.
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Hey, thanks for the compliment! Much appreciated.
If you look at a figure in an article, for example https://www.authorea.com/483, you'll notice that the figure reference has been pulled out of the latex source. We did that so that in the online version of an article we can make figures cooler, like attaching data to them. Figures exist in their own folders, and we have big plans for those folders.