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Comment on Launch HN: Keyri (YC S21) – Secure smartphone-based passwordless authenticationparent

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Isn't this a problem then with WhatsApp Web login too

Yes, it's an issue with WhatsApp QR login and every other QR login implementation.

I was also wondering if its a severe vulnerability

It can be severe if the attacker only needs to be authenticated in the victim's account for a short while to do damage. For example, to withdraw cryptocurrency from an exchange account. Or, in the case of WhatsApp, to extract damaging personal info. Persistent access is not a prerequisite for the ability to do harm.

Am I correct in guessing that FIDO2 solves this "trust gap" problem with CTAP2 by relying on BLE, USB, NFC to prove user-presence

Partially correct - there's two-way communication in FIDO2/CTAP2 in which the roaming authenticator confirms the "identity" of the web session before sending an auth request. The user-presence aspect is incidental to these three protocols. We do the same thing, just with CV

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